When you try to create new sharepoint shared services or (SSP),if you faced that the created site is not coming on the web application list,you have to know that this means that your application is running under Network Service or local service account.
The Solution : change the serivce account which run your web application.
To Do that : open SharePoint Central Administration -> click on Operation Tab -> Services Account.
Select your web application and change the account which running your site.
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